Cell Interactome

Key Contributors

• Toru Maruyama: Lead Developer

• David Dylus: Enabling guidance

• Nicola Gagliani: Enabling guidance, Concept making

Cell Interactome is a software suite for building and analyzing knowledge graph of host cells, microbes and metabolites.

Cell Interactome has two software components: (i) Cell Interactome Toolkit software to build knowledge graph from multi-omics and public resources, (ii) R package CellInteractomeR to analyze the knowledge graph.

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Start from here

Please start from the following sections in order to build your own knowledge graph.

• Setup tools

• Building graph

• Input files: Config file

• Input files: Omics data

Please start from the sections below to analyze your graph or public graph with CellInteractomeR.

• Dashboard

• Advanced use cases

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News/Updates

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Version 1.0.0 of Cell Interactome was released!

Please find our preprint (http://doi.xxxx) for more detailed information.