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Cell Interactome
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.. sidebar:: Key Contributors
   
   * `Toru Maruyama <https://github.com/tmaruy>`_: Lead Developer
   * `David Dylus <https://tbd>`_: Enabling guidance
   * `Nicola Gagliani <https://www.uke.de/landingpage/ag-gagliani/index.html>`_: Enabling guidance, Concept making

*Cell Interactome* is a software suite for building and analyzing knowledge graph of 
host cells, microbes and metabolites. 

*Cell Interactome* has two software components: 
(i) *Cell Interactome Toolkit* software to build knowledge graph from multi-omics and 
public resources, (ii) R package *CellInteractomeR* to analyze the knowledge graph.


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Start from here
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Please start from the following sections in order to build your own knowledge graph.

* :ref:`Setup tools`
* :ref:`Building graph`
* :ref:`Input files: Config file`
* :ref:`Input files: Omics data`

Please start from the sections below to analyze your graph or public graph with *CellInteractomeR*.

* :ref:`Dashboard`
* :ref:`Advanced use cases`


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News/Updates
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