• Cell Interactome
  • Start from here
  • News/Updates
• Setup tools
  • Install Neo4j
  • Install Cell Interactome
  • Install CellInteractomeR
• Building graph
  • Example data
  • Basic usage
  • Commands
• Input file: Config file
  • Section: input
  • Section: metadata
  • Section: pipeline
  • Section: public
• Input file: Omics data
  • Bulk omics data
  • scRNA-seq data
  • Metadata
• Dashboard
  • Interactive exploration with CellInteractomeR
  • How to use the dashboard
• Advanced use cases
  • Programmatic access of the knowledge graph
  • Advanced analysis with the graph
• Citation